STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR25WD repeat domain 25. (488 aa)    
Predicted Functional Partners:
cdc5l
Cell division cycle 5 like.
   
 0.994
ENSCHAP00000025604
Crooked neck pre-mRNA splicing factor 1.
   
 0.994
ENSCHAP00000032669
SYF2 pre-mRNA-splicing factor.
    
 0.994
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.994
snw1
SNW domain containing 1.
   
 0.994
ENSCHAP00000049225
XPA binding protein 2.
    
 0.994
prpf8
pre-mRNA processing factor 8.
   
 0.993
bcas2
BCAS2 pre-mRNA processing factor.
   
 0.993
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.992
snrnp48
Small nuclear ribonucleoprotein U11/U12 subunit 48.
   
 0.992
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.