STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000054109DENN/MADD domain containing 6Aa. (601 aa)    
Predicted Functional Partners:
LOC105892623
Ras-related protein Rab-14-like.
     
 0.668
LOC105889591
Ras-related protein Rab-14.
     
 0.668
dennd11
DENN domain containing 11.
      
 0.534
ENSCHAP00000051821
AVL9 homolog (S. cerevisiase).
      
 0.532
ENSCHAP00000024532
annotation not available
    
   0.457
ENSCHAP00000057597
Sorting nexin 15.
    
   0.457
ENSCHAP00000020013
Spliceosome associated factor 3, U4/U6 recycling protein.
      
 0.445
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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