STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000054145Nuclear receptor subfamily 2, group C, member 1. (586 aa)    
Predicted Functional Partners:
ENSCHAP00000019849
Nuclear receptor corepressor 2.
   
 0.775
ENSCHAP00000031150
Nuclear receptor corepressor 1.
   
 0.775
JAZF1
JAZF zinc finger 1.
    
 
 0.694
JAZF1-2
JAZF zinc finger 1.
    
 
 0.694
hdac3
Histone deacetylase 3.
    
 0.667
LOC105904441
Nuclear receptor-interacting protein 1-like.
    
 0.641
ENSCHAP00000037373
Heat shock protein 90, beta (grp94), member 1.
   
 0.623
RBM22
RNA binding motif protein 22.
   
 0.622
rbm22
RNA binding motif protein 22.
   
 0.622
rpl9
Ribosomal protein L9.
    
 0.598
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.