STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105912256NEDD8-activating enzyme E1 catalytic subunit. (468 aa)    
Predicted Functional Partners:
ENSCHAP00000047548
Nedd8 activating enzyme E1 subunit 1.
   
 0.996
trip12
Thyroid hormone receptor interactor 12.
    
 0.992
ENSCHAP00000007825
NEDD8 ubiquitin like modifier, like.
   
 0.987
ENSCHAP00000000456
annotation not available
   
 
 0.986
ENSCHAP00000057335
annotation not available
   
 0.967
ube2m
Ubiquitin conjugating enzyme E2 M.
    
 0.963
ube2f
Ubiquitin conjugating enzyme E2 F (putative).
    
 0.963
ENSCHAP00000020796
Molybdenum cofactor synthesis 2.
  
 0.940
ENSCHAP00000030857
annotation not available
   
 0.911
ENSCHAP00000062823
Baculoviral IAP repeat containing 6.
  
 0.903
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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