STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nufip2Nuclear FMR1 interacting protein 2. (703 aa)    
Predicted Functional Partners:
ENSCHAP00000059861
DEAH (Asp-Glu-Ala-His) box helicase 9.
     
 0.933
rpl8
Ribosomal protein L8.
    
  0.930
rpl11
Ribosomal protein L11.
    
  0.917
trip12
Thyroid hormone receptor interactor 12.
   
    0.877
ENSCHAP00000007619
annotation not available
    
 
 0.874
mrpl2
Mitochondrial ribosomal protein L2.
    
  0.834
ENSCHAP00000009605
La ribonucleoprotein 1B.
     
 0.816
ENSCHAP00000009929
La ribonucleoprotein 1, translational regulator.
     
 0.816
RPL19
60S ribosomal protein L19-like.
    
  0.814
LOC105890759
60S ribosomal protein L19.
    
  0.814
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.