STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbx4PBX homeobox 4. (458 aa)    
Predicted Functional Partners:
meis2
Meis homeobox 2.
   
0.849
meis1
Meis homeobox 1.
   
0.849
LOC105888814
Homeobox protein Hox-B1b-like.
    
 0.830
hoxb1
Homeobox B1.
    
 0.818
LOC105912855
Homeobox protein Hox-B5a.
    
 0.778
LOC105888810
Homeobox protein Hox-B5b-like.
    
 0.778
ENSCHAP00000059931
annotation not available
   
 0.752
LOC105908118
Homeobox protein Hox-C4a-like.
    
 0.744
hoxb7
Homeobox B7.
    
 0.740
ENSCHAP00000024358
Homeobox B8a.
    
 0.740
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.