STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000054633annotation not available (378 aa)    
Predicted Functional Partners:
ENSCHAP00000059311
annotation not available
   
 0.927
ENSCHAP00000054339
annotation not available
    
 0.894
chdh
Choline dehydrogenase.
   
  
 0.747
ENSCHAP00000006347
Si:ch211-207e14.4.
   
 0.627
h6pd
Hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase.
   
 
 0.609
ENSCHAP00000046398
annotation not available
      
 0.521
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.519
ENSCHAP00000040372
Lin-52 DREAM MuvB core complex component.
    
 0.516
ENSCHAP00000013547
Replication protein A1.
    
 0.498
meiob
Meiosis specific with OB-fold.
    
 0.498
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.