STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000054798annotation not available (768 aa)    
Predicted Functional Partners:
rab8b
RAB8B, member RAS oncogene family.
    
 0.873
rab13
RAB13, member RAS oncogene family.
    
 0.873
LOC105890994
Alpha-actinin-1.
    
0.839
ENSCHAP00000025941
Membrane associated guanylate kinase, WW and PDZ domain containing 3b.
   
  0.824
ENSCHAP00000041671
annotation not available
   
  0.824
ENSCHAP00000051208
annotation not available
   
  0.824
ENSCHAP00000060892
Calcium/calmodulin-dependent serine protein kinase a.
   
  0.764
ENSCHAP00000010980
annotation not available
    
 0.671
eif3l
Eukaryotic translation initiation factor 3 subunit L.
 
   
  0.667
LOC105898015
Ras-related protein Rab-10-like.
    
 0.632
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.