STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105888905ER lumen protein-retaining receptor 2. (212 aa)    
Predicted Functional Partners:
tmed10
Transmembrane p24 trafficking protein 10.
   
 0.849
ENSCHAP00000024710
Surfeit 4.
   
 0.821
LOC105911418
Surfeit locus protein 4-like.
   
 0.821
ENSCHAP00000008182
annotation not available
   
 0.802
copb1
Coatomer protein complex subunit beta 1.
   
 0.802
copa
Coatomer protein complex subunit alpha.
     
 0.778
ENSCHAP00000052596
Golgi brefeldin A resistant guanine nucleotide exchange factor 1.
    
 0.778
ENSCHAP00000042466
Coatomer protein complex, subunit beta 2.
   
 
 0.775
arfgap1
ADP ribosylation factor GTPase activating protein 1.
    
 0.766
ENSCHAP00000049229
Coatomer protein complex, subunit gamma 2.
     
 0.762
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.