STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000054866TAP binding protein (tapasin), tandem duplicate 2. (334 aa)    
Predicted Functional Partners:
ENSCHAP00000004633
Calreticulin 3b.
    
 0.984
ENSCHAP00000035341
Calreticulin.
    
 0.984
LOC105896182
Protein disulfide-isomerase A3-like.
    
 0.971
pdia3
Protein disulfide isomerase family A member 3.
    
 0.971
ENSCHAP00000053322
Transporter associated with antigen processing, subunit type a.
   
 0.971
ENSCHAP00000005035
Replication protein A2.
   
 0.970
ENSCHAP00000035772
annotation not available
   
 0.970
ENSCHAP00000040049
Transporter associated with antigen processing, subunit type t, teleost specific.
   
 0.966
ENSCHAP00000012076
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).
   
 0.962
pdia4
Protein disulfide isomerase family A member 4.
    
 0.955
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.