STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000054891Olfactomedin 3a. (464 aa)    
Predicted Functional Partners:
cacng3
Calcium voltage-gated channel auxiliary subunit gamma 3.
   
  0.746
vwc2
Von Willebrand factor C domain containing 2.
   
 
 0.675
LOC105894622
Voltage-dependent calcium channel gamma-4 subunit-like.
    
  0.649
gria2
Glutamate ionotropic receptor AMPA type subunit 2.
   
  0.640
ENSCHAP00000061965
Glutamate receptor, ionotropic, AMPA 2a.
   
  0.640
abhd6
Abhydrolase domain containing 6.
     
 0.611
ENSCHAP00000047668
Abhydrolase domain containing 6a.
     
 0.611
LOC105891600
Glutamate receptor ionotropic, NMDA 1-like.
   
 
  0.593
ENSCHAP00000056897
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
 
  0.593
ENSCHAP00000015564
5-hydroxytryptamine (serotonin) receptor 3B.
   
 
  0.587
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.