STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000054985annotation not available (2875 aa)    
Predicted Functional Partners:
exosc7
Exosome component 7.
   
 0.953
exosc1
Exosome component 1.
   
 0.950
mtrex
Mtr4 exosome RNA helicase.
   
 0.949
exosc9
Exosome component 9.
   
 0.948
exosc10
Exosome component 10.
   
 0.946
ENSCHAP00000059480
Exosome component 8.
   
 0.946
exosc3
Exosome component 3.
   
 0.943
exosc2
Exosome component 2.
   
 0.942
exosc5
Exosome component 5.
   
 0.942
ENSCHAP00000039465
C1D nuclear receptor corepressor.
   
 0.937
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.