STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atp13a1ATPase 13A1. (1196 aa)    
Predicted Functional Partners:
PLN
Phospholamban.
    
 0.772
ENSCHAP00000032050
ATPase copper transporting alpha.
   
 0.636
ENSCHAP00000046123
ATPase copper transporting beta.
   
 0.636
ENSCHAP00000044122
Calmodulin-like 4b.
   
 
 0.632
pgk1
Phosphoglycerate kinase 1.
    
 
 0.624
ENSCHAP00000028521
Cleavage and polyadenylation specific factor 1.
   
    0.624
ENSCHAP00000002018
ATPase Na+/K+ transporting subunit beta 2b.
    
 0.623
ENSCHAP00000033653
ATPase Na+/K+ transporting subunit beta 3a.
    
 0.623
ENSCHAP00000037573
ATPase Na+/K+ transporting subunit beta 2a.
    
 0.623
LOC105909772
Sodium/potassium-transporting ATPase subunit beta-3-like.
    
 0.623
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.