STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105912237Red-sensitive opsin. (357 aa)    
Predicted Functional Partners:
gng10
G protein subunit gamma 10.
    
 0.731
gng5
G protein subunit gamma 5.
    
 0.730
gng13
G protein subunit gamma 13.
    
  0.721
gng3
G protein subunit gamma 3.
    
  0.720
GNG4
G protein subunit gamma 4.
    
  0.719
ENSCHAP00000045765
Opsin 1 (cone pigments), short-wave-sensitive 1.
   
 
0.713
LOC105909826
RPE-retinal G protein-coupled receptor-like.
   
 
0.708
gng8
G protein subunit gamma 8.
    
  0.683
ENSCHAP00000005464
Guanine nucleotide binding protein (G protein), beta 5b.
    
 0.679
LOC105892356
Guanine nucleotide-binding protein subunit beta-5.
    
 0.679
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.