STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000055178Methyl CpG binding protein 2. (497 aa)    
Predicted Functional Partners:
ENSCHAP00000010428
SIN3 transcription regulator family member B.
    
 0.943
ENSCHAP00000061580
SIN3 transcription regulator family member Ab.
    
 0.943
ENSCHAP00000011383
annotation not available
    
 0.938
LOC105893332
Histone-binding protein RBBP7.
    
 0.938
ENSCHAP00000022178
Metastasis associated 1.
   
 0.926
mta2
Metastasis associated 1 family member 2.
   
 0.926
ENSCHAP00000050443
Metastasis associated 1 family, member 3.
   
 0.926
mcrs1
Microspherule protein 1.
    
 0.922
HDAC2
Histone deacetylase 2.
    
 0.898
LOC105892066
Probable histone deacetylase 1-B.
    
 0.898
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.