STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105895654Chromosome unknown open reading frame, human C12orf4. (551 aa)    
Predicted Functional Partners:
ENSCHAP00000000938
SLX1 homolog B, structure-specific endonuclease subunit.
   
    0.788
ENSCHAP00000061128
TBC1 domain containing kinase.
    
 
 0.742
ENSCHAP00000048431
Protein phosphatase 1, regulatory subunit 21.
    
 
 0.735
ENSCHAP00000057919
annotation not available
    
 
 0.576
ENSCHAP00000059493
annotation not available
    
 
 0.576
ENSCHAP00000006558
Transmembrane protein 106C.
      
 0.522
znf330
Zinc finger protein 330.
      
 0.522
tmem184c
Transmembrane protein 184C.
   
    0.495
ENSCHAP00000026945
Crystallin, zeta (quinone reductase)-like 1.
   
   0.473
pelo
Pelota mRNA surveillance and ribosome rescue factor.
   
    0.461
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.