STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105907264Protein lin-28 homolog B-like. (229 aa)    
Predicted Functional Partners:
snrpf
Small nuclear ribonucleoprotein polypeptide F.
    
  0.742
ENSCHAP00000059861
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 0.737
snrpg
Small nuclear ribonucleoprotein polypeptide G.
    
  0.734
ncbp2
Nuclear cap binding protein subunit 2.
   
 0.727
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.715
ENSCHAP00000022226
Symplekin.
    
 0.693
sf3b1
Splicing factor 3b subunit 1.
    
  0.690
sf3b3
Splicing factor 3b subunit 3.
    
  0.687
lsm14a
LSM14A mRNA processing body assembly factor.
    
 0.685
lsm14b
LSM family member 14B.
    
 0.685
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.