ENSCHAP00000055505 protein (Clupea harengus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCHAP00000055505

annotation not available (442 aa)

Predicted Functional Partners:

ENSCHAP00000000246

0.892

ENSCHAP00000055573

0.874

ENSCHAP00000000396

0.867

ENSCHAP00000000348

0.864

ENSCHAP00000055544

0.858

ENSCHAP00000055562

0.825

ENSCHAP00000000296

0.798

ENSCHAP00000000759

0.797

ENSCHAP00000000237

0.788

ENSCHAP00000000355

0.759

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSCHAP00000000237	ENSCHAP00000000296	annotation not available	annotation not available	0.899
ENSCHAP00000000237	ENSCHAP00000000348	annotation not available	annotation not available	0.900
ENSCHAP00000000237	ENSCHAP00000000759	annotation not available	annotation not available	0.899
ENSCHAP00000000237	ENSCHAP00000055505	annotation not available	annotation not available	0.788
ENSCHAP00000000246	ENSCHAP00000000296	annotation not available	annotation not available	0.887
ENSCHAP00000000246	ENSCHAP00000000348	annotation not available	annotation not available	0.899
ENSCHAP00000000246	ENSCHAP00000000759	annotation not available	annotation not available	0.885
ENSCHAP00000000246	ENSCHAP00000055505	annotation not available	annotation not available	0.892
ENSCHAP00000000246	ENSCHAP00000055573	annotation not available	annotation not available	0.915
ENSCHAP00000000296	ENSCHAP00000000237	annotation not available	annotation not available	0.899
ENSCHAP00000000296	ENSCHAP00000000246	annotation not available	annotation not available	0.887
ENSCHAP00000000296	ENSCHAP00000000348	annotation not available	annotation not available	0.628
ENSCHAP00000000296	ENSCHAP00000000355	annotation not available	annotation not available	0.899
ENSCHAP00000000296	ENSCHAP00000000396	annotation not available	annotation not available	0.883
ENSCHAP00000000296	ENSCHAP00000055505	annotation not available	annotation not available	0.798
ENSCHAP00000000296	ENSCHAP00000055544	annotation not available	annotation not available	0.894
ENSCHAP00000000296	ENSCHAP00000055562	annotation not available	annotation not available	0.884
ENSCHAP00000000296	ENSCHAP00000055573	annotation not available	annotation not available	0.891
ENSCHAP00000000348	ENSCHAP00000000237	annotation not available	annotation not available	0.900
ENSCHAP00000000348	ENSCHAP00000000246	annotation not available	annotation not available	0.899