STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000055693Ring finger protein 13. (223 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
  0.735
ENSCHAP00000007633
OTU deubiquitinase, ubiquitin aldehyde binding 1b.
    
 0.707
ENSCHAP00000030291
Ubiquitin B.
    
  0.675
ENSCHAP00000030857
annotation not available
    
  0.649
ube2t
Ubiquitin conjugating enzyme E2 T.
    
 0.483
parp16
poly(ADP-ribose) polymerase family member 16.
    
 
 0.482
AP3S1
Adaptor related protein complex 3 subunit sigma 1.
    
 
 0.457
ap3s2
Adaptor related protein complex 3 subunit sigma 2.
    
 
 0.457
ube2d3
Ubiquitin conjugating enzyme E2 D3.
    
 0.446
ENSCHAP00000017269
annotation not available
    
 0.446
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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