STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000055698annotation not available (97 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.676
ENSCHAP00000060131
Cyclin G associated kinase.
   
 0.625
ENSCHAP00000008049
enoyl-CoA delta isomerase 2.
    
  0.614
mars1
methionyl-tRNA synthetase 1.
   
 0.611
ENSCHAP00000055714
annotation not available
  
 
  0.594
ENSCHAP00000027391
WD repeat domain 90.
    
 0.585
ENSCHAP00000022879
UBX domain protein 7.
    
 0.583
traf7
TNF receptor associated factor 7.
    
  0.581
ENSCHAP00000011314
Katanin p60 subunit A-like 2.
   
 0.577
pla2g4a
Phospholipase A2 group IVA.
    
 0.560
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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