STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105902671Acid-sensing ion channel 4. (537 aa)    
Predicted Functional Partners:
stoml1
Stomatin like 1.
    
 0.702
ENSCHAP00000047252
Sodium channel, voltage-gated, type II, beta.
     
 0.695
ENSCHAP00000019821
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2a.
    
 0.693
ENSCHAP00000032929
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1b.
    
 0.693
ENSCHAP00000039879
annotation not available
    
 0.693
LOC105896609
E3 ubiquitin-protein ligase HECW2-like.
    
 0.693
ENSCHAP00000050594
Si:ch211-188f17.1.
    
 0.693
ENSCHAP00000050814
NEDD4 like E3 ubiquitin protein ligase.
    
 0.693
ENSCHAP00000026254
Sodium channel, voltage-gated, type III, beta.
     
 0.657
SCN4B
Sodium voltage-gated channel beta subunit 4.
     
 0.644
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.