STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000056351Collagen, type VI, alpha 2. (781 aa)    
Predicted Functional Partners:
ENSCHAP00000056433
Collagen, type VI, alpha 1.
  
0.968
ENSCHAP00000018588
annotation not available
  
0.967
itgb5
Integrin subunit beta 5.
    
 0.848
itgb6
Integrin subunit beta 6.
    
 0.847
ENSCHAP00000023060
Integrin, beta 4.
    
 0.847
ENSCHAP00000010301
Integrin, beta 1b.
    
 0.845
itgb8
Integrin subunit beta 8.
    
 0.845
ITGA7
Integrin subunit alpha 7.
   
 
 0.843
ENSCHAP00000015849
Integrin, alpha 10.
   
 
 0.840
ENSCHAP00000042663
Integrin, alpha 2b.
   
 
 0.834
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.