STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000056445annotation not available (1197 aa)    
Predicted Functional Partners:
ENSCHAP00000057267
Golgi glycoprotein 1b.
  
  
 
0.849
ENSCHAP00000018981
annotation not available
    
 0.723
ENSCHAP00000019074
annotation not available
    
 0.723
ENSCHAP00000019095
Selectin E.
    
 0.723
fam234b
Family with sequence similarity 234 member B.
      
 0.543
LOC105909424
Myc target protein 1 homolog.
      
 0.528
tm9sf2
Transmembrane 9 superfamily member 2.
   
  
 0.524
ENSCHAP00000026298
Si:dkey-220o5.5.
      
 0.521
ENSCHAP00000042033
G patch domain containing 1.
      
 0.521
plekhj1
Pleckstrin homology domain containing J1.
      
 0.519
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.