STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000056531LIM domain binding 2b. (416 aa)    
Predicted Functional Partners:
lmo2
LIM domain only 2.
    
 0.956
ENSCHAP00000018295
annotation not available
    
 0.944
ENSCHAP00000048832
LIM domain only 3.
    
 0.930
ENSCHAP00000055314
LIM domain only 1.
    
 0.930
LHX2
LIM homeobox 2.
    
 0.822
LOC105891602
LIM/homeobox protein Lhx2-like.
    
 0.822
lhx9
LIM homeobox 9.
    
 0.822
ENSCHAP00000062739
Lymphoid enhancer-binding factor 1.
    
 0.811
ENSCHAP00000014391
Islet1, like.
    
 0.799
ENSCHAP00000019229
ISL LIM homeobox 2a.
    
 0.799
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.