STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000056564Matrix metallopeptidase 21. (626 aa)    
Predicted Functional Partners:
ENSCHAP00000035186
TIMP metallopeptidase inhibitor 2a.
    
 0.843
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 0.796
ENSCHAP00000003156
annotation not available
    
  0.662
ENSCHAP00000008564
Zmp:0000000846.
    
  0.662
ENSCHAP00000012495
annotation not available
    
  0.662
ENSCHAP00000053830
Tenascin N.
    
  0.662
tnr
Tenascin R.
    
  0.662
uros
Uroporphyrinogen III synthase.
 
      0.640
timp4
TIMP metallopeptidase inhibitor 4.
    
 0.635
ENSCHAP00000018864
Nidogen 1a.
     
 0.601
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.