STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sys1SYS1 golgi trafficking protein. (156 aa)    
Predicted Functional Partners:
arfrp1
ADP ribosylation factor related protein 1.
   
 
 0.905
ENSCHAP00000019684
VPS52 subunit of GARP complex.
     
 0.788
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
     
 0.782
ENSCHAP00000060695
Component of oligomeric golgi complex 3.
     
 0.709
LOC105896374
Apolipoprotein C-I-like.
   
 
 0.703
ENSCHAP00000024247
Component of oligomeric golgi complex 1.
   
 
 0.701
cog6
Component of oligomeric golgi complex 6.
     
 0.698
ENSCHAP00000042908
RAB6B, member RAS oncogene family a.
     
 0.691
ENSCHAP00000045707
RAB41, member RAS oncogene family.
     
 0.691
cog7
Component of oligomeric golgi complex 7.
     
 0.685
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.