STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000057181Membrane associated guanylate kinase, WW and PDZ domain containing 1b. (1672 aa)    
Predicted Functional Partners:
ENSCHAP00000041193
annotation not available
    
 0.928
LOC105890994
Alpha-actinin-1.
    
 0.879
ENSCHAP00000025941
Membrane associated guanylate kinase, WW and PDZ domain containing 3b.
  
 
0.851
ENSCHAP00000057166
Membrane associated guanylate kinase, WW and PDZ domain containing 1a.
  
  
 
0.850
ENSCHAP00000056429
Rap guanine nucleotide exchange factor (GEF) 6.
    
  0.838
CTNNB1
Catenin beta 1.
    
 0.834
pard6a
Par-6 family cell polarity regulator alpha.
     
 0.830
ENSCHAP00000025324
annotation not available
    
 0.819
LOC105900832
annotation not available
    
 0.805
ENSCHAP00000048241
Transmembrane phosphatase with tensin homology.
    
 0.805
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.