STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000057303CASK interacting protein 1. (1601 aa)    
Predicted Functional Partners:
ENSCHAP00000060892
Calcium/calmodulin-dependent serine protein kinase a.
   
 0.913
ENSCHAP00000049505
Membrane protein, palmitoylated 1.
    
 0.733
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.725
ENSCHAP00000016350
Fras1 related extracellular matrix 1a.
   
  0.705
ENSCHAP00000022264
Fras1 related extracellular matrix 1b.
   
  0.705
srp19
Signal recognition particle 19.
   
 
  0.668
mars1
methionyl-tRNA synthetase 1.
   
 0.611
traf7
TNF receptor associated factor 7.
    
 0.594
ENSCHAP00000010106
BCL2 associated athanogene 5.
   
   0.590
ENSCHAP00000022879
UBX domain protein 7.
    
 0.590
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.