STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105912477Transmembrane protein 47-like. (172 aa)    
Predicted Functional Partners:
ENSCHAP00000017703
Catenin (cadherin-associated protein), delta 2a.
     
 0.449
ENSCHAP00000029981
Catenin (cadherin-associated protein), delta 2b.
     
 0.449
ENSCHAP00000056733
Plakophilin 4.
     
 0.449
ctnnd1
Catenin delta 1.
     
 0.449
PKP4
Plakophilin 4.
     
 0.449
ARVCF
ARVCF delta catenin family member.
     
 0.449
en2
Engrailed homeobox 2.
   
  
 0.426
lhfpl2
LHFPL tetraspan subfamily member 2.
      
 0.424
tmem178a
Transmembrane protein 178A.
      
 0.418
prmt5
Protein arginine methyltransferase 5.
      
 0.407
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.