STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000057478Transgelin 2. (323 aa)    
Predicted Functional Partners:
ENSCHAP00000027391
WD repeat domain 90.
    
 
 0.878
pacrg
Parkin coregulated.
    
 
 0.761
ENSCHAP00000028636
Enkurin, TRPC channel interacting protein.
   
 
 0.734
LOC105896556
Actin, alpha cardiac muscle 2-like.
   
 0.673
LOC105892964
Actin, alpha cardiac muscle 1.
   
 0.673
actb
Actin, cytoplasmic 1.
   
 0.673
ENSCHAP00000016189
annotation not available
   
 0.673
LOC105902989
Clupea harengus actin, alpha cardiac muscle 1-like (LOC105902989), mRNA.
   
 0.673
acta1
Actin, alpha cardiac.
   
 0.673
LOC105907633
Clupea harengus actin, alpha skeletal muscle 2-like (LOC105907633), mRNA.
   
 0.673
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.