STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmco4Transmembrane and coiled-coil domains 4. (730 aa)    
Predicted Functional Partners:
pex13
Peroxisomal biogenesis factor 13.
     
 0.582
ENSCHAP00000042236
Peroxisomal biogenesis factor 14.
     
 0.530
ENSCHAP00000001825
Adaptor related protein complex 1 subunit sigma 3b.
    
 
 0.440
ENSCHAP00000006677
VGF nerve growth factor inducible.
    
 
 0.440
ap1s1
Adaptor related protein complex 1 subunit sigma 1.
    
 
 0.440
serpini1
Serpin family I member 1.
      
 0.440
LOC105893284
AP-1 complex subunit sigma-2-like.
    
 
 0.440
AP1S2
Adaptor related protein complex 1 subunit sigma 2.
    
 
 0.440
ap2b1
Adaptor related protein complex 2 subunit beta 1.
    
  0.439
ap4b1
Adaptor related protein complex 4 subunit beta 1.
    
  0.439
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.