STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000057740annotation not available (2299 aa)    
Predicted Functional Partners:
ENSCHAP00000016476
annotation not available
   
 0.997
RAMAC
RNA guanine-7 methyltransferase activating subunit.
   
 0.992
ENSCHAP00000043280
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
   
 
  0.948
ENSCHAP00000041613
Polymerase (RNA) II (DNA directed) polypeptide A.
   
 
 0.911
ENSCHAP00000048110
annotation not available
   
 
 0.911
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.871
ENSCHAP00000006565
annotation not available
    
 
 0.863
ncbp2
Nuclear cap binding protein subunit 2.
    
 
 0.835
supt5h
SPT5 homolog, DSIF elongation factor subunit.
    
 
 0.796
ENSCHAP00000040820
Drosha ribonuclease III.
   
 
 0.773
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.