STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000057793RAB1A, member RAS oncogene family b. (167 aa)    
Predicted Functional Partners:
ENSCHAP00000011229
Trafficking protein particle complex 3.
   
 0.926
c9orf72
C9orf72-SMCR8 complex subunit.
    
 0.917
trappc1
Trafficking protein particle complex 1.
    
 0.912
trappc4
Trafficking protein particle complex 4.
    
 0.907
trappc8
Trafficking protein particle complex 8.
    
 0.898
TRAPPC5
Trafficking protein particle complex 5.
    
 0.894
TRAPPC2B
Trafficking protein particle complex 2B.
    
 0.891
uso1
USO1 vesicle transport factor.
   
 0.885
rabggtb
Rab geranylgeranyltransferase subunit beta.
    
 0.834
trappc6b
Trafficking protein particle complex 6B.
    
 0.829
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.