STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000057940annotation not available (187 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
  0.477
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.476
ENSCHAP00000012123
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
  0.461
ENSCHAP00000030857
annotation not available
    
  0.461
ENSCHAP00000049028
Transformation/transcription domain-associated protein.
    
  0.461
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
  0.456
taf10
TATA-box binding protein associated factor 10.
    
  0.449
ENSCHAP00000014455
Family with sequence similarity 78 member Ba.
  
 
   0.446
TADA1
Transcriptional adaptor 1.
    
  0.445
fam78a
Family with sequence similarity 78 member A.
  
 
   0.438
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.