STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000058045Myosin VB. (1866 aa)    
Predicted Functional Partners:
rab11a
RAB11A, member RAS oncogene family.
   
 0.867
LOC105891875
Ras-related protein Rab-11A-like.
   
 0.834
LOC105889693
Ras-related protein Rab-11B-like.
   
 0.834
LOC105900968
Ras-related protein Rab-11B-like.
   
 0.834
LOC105897346
Myosin light polypeptide 6.
    
 0.765
exoc4
Exocyst complex component 4.
    
 0.747
ENSCHAP00000036221
annotation not available
   
 0.716
ENSCHAP00000038396
RAB11 family interacting protein 2 (class I).
   
 0.716
ENSCHAP00000048095
annotation not available
   
 0.716
calm1
Calmodulin.
    
 0.710
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.