STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000058172Si:ch211-225b10.4. (1049 aa)    
Predicted Functional Partners:
ENSCHAP00000055449
TATA element modulatory factor 1.
   
 
 0.687
ENSCHAP00000024139
VPS54 subunit of GARP complex.
     
 0.637
vps51
VPS51 subunit of GARP complex.
     
 0.637
ENSCHAP00000019684
VPS52 subunit of GARP complex.
     
 0.634
ENSCHAP00000004368
annotation not available
   
    0.595
ENSCHAP00000018160
annotation not available
   
    0.595
ENSCHAP00000045831
EARP complex and GARP complex interacting protein 1.
      
 0.568
ENSCHAP00000010311
Vesicle transport through interaction with t-SNAREs 1A.
     
 0.550
ENSCHAP00000036613
VPS50 EARP/GARPII complex subunit.
      
 0.548
ENSCHAP00000057985
NHL repeat containing 2.
   
  
 0.540
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.