STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000058340annotation not available (801 aa)    
Predicted Functional Partners:
ENSCHAP00000030291
Ubiquitin B.
   
 0.964
ENSCHAP00000033351
TNF receptor-associated factor 6.
    
 0.959
TRAF6
TNF receptor-associated factor 6-like.
    
 0.959
LOC105899975
Next to BRCA1 gene 1 protein-like.
    
 0.949
ENSCHAP00000031450
NBR1 autophagy cargo receptor a.
    
 0.949
ENSCHAP00000001644
annotation not available
    
 0.948
prkci
Protein kinase C iota.
    
 0.948
ENSCHAP00000031540
Microtubule-associated protein 1 light chain 3 alpha.
   
 0.946
map1lc3b
Microtubule associated protein 1 light chain 3 beta.
   
 0.946
ENSCHAP00000016427
Parkin RBR E3 ubiquitin protein ligase.
    
 0.932
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.