STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000058350Microtubule associated monooxygenase, calponin and LIM domain containing 2b. (1502 aa)    
Predicted Functional Partners:
pdlim4
PDZ and LIM domain 4.
     
 0.594
rab13
RAB13, member RAS oncogene family.
   
 
 0.591
LOC105898015
Ras-related protein Rab-10-like.
   
 
 0.589
LOC105889812
Ras-related protein Rab-15-like.
   
 
 0.589
rab8b
RAB8B, member RAS oncogene family.
   
 
 0.589
RAB15
RAB15, member RAS oncogene family.
   
 
 0.589
rab10
RAB10, member RAS oncogene family.
   
 
 0.589
garem1
GRB2 associated regulator of MAPK1 subtype 1.
   
 
 0.554
ENSCHAP00000052430
GRB2 associated, regulator of MAPK1-like.
   
 
 0.554
ENSCHAP00000003208
EH domain binding protein 1.
   
0.535
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.