STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000058450annotation not available (1619 aa)    
Predicted Functional Partners:
ENSCHAP00000054960
Actin related protein 8.
    
 0.806
ruvbl1
RuvB like AAA ATPase 1.
    
 0.756
ENSCHAP00000059679
Actin related protein 5.
    
 0.756
ENSCHAP00000002381
Excision repair cross-complementation group 3.
   
 0.739
gtf2h1
General transcription factor IIH subunit 1.
    
 0.737
ENSCHAP00000026594
General transcription factor IIH, polypeptide 3.
    
 0.733
ENSCHAP00000047282
Polymerase (RNA) mitochondrial (DNA directed).
    
 0.732
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
    
  0.714
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
    
  0.714
ino80c
INO80 complex subunit C.
    
 0.712
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.