STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000058889Nuclear receptor subfamily 5, group A, member 1a. (510 aa)    
Predicted Functional Partners:
LOC105908742
Nuclear receptor subfamily 0 group B member 1-like.
    
0.961
ENSCHAP00000007452
Nuclear receptor subfamily 0, group B, member 2b.
   
0.845
ENSCHAP00000027915
Nuclear receptor subfamily 0, group B, member 2a.
   
0.845
ncoa1
Nuclear receptor coactivator 1.
    
 0.797
ENSCHAP00000020685
Nuclear receptor coactivator 3.
    
 0.797
ENSCHAP00000046101
Nuclear receptor coactivator 2.
    
 0.797
ncoa3
Nuclear receptor coactivator 3.
    
 0.797
hoxb7
Homeobox B7.
    
 0.772
ENSCHAP00000025324
annotation not available
    
 
 0.771
CTNNB1
Catenin beta 1.
    
 
 0.771
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.