STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105908354Neuroglobin-like. (200 aa)    
Predicted Functional Partners:
ENSCHAP00000033279
Cytochrome b5 reductase 4.
   
 0.728
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
    
  0.689
ENSCHAP00000036476
annotation not available
   
  
 0.527
cygb
Cytoglobin.
      
0.522
ENSCHAP00000024741
Danio rerio myoglobin (mb), transcript variant 2, mRNA.
      
 0.520
LOC105892381
Haptoglobin-like.
    
 0.457
ENSCHAP00000042959
annotation not available
    
 0.457
EDN2
Endothelin 2.
      
 0.422
ENSCHAP00000023346
Eukaryotic translation initiation factor 3, subunit Ja.
    
 
 0.406
eif3j
Eukaryotic translation initiation factor 3 subunit J.
    
 
 0.406
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.