STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dimt1DIMT1 rRNA methyltransferase and ribosome maturation factor. (323 aa)    
Predicted Functional Partners:
ENSCHAP00000013289
LTV1 ribosome biogenesis factor.
   
 0.999
tsr1
TSR1 ribosome maturation factor.
   
 0.999
ENSCHAP00000019409
Nucleolar complex associated 4 homolog.
   
  0.999
LOC105902840
Periodic tryptophan protein 2 homolog.
   
 0.999
ENSCHAP00000045557
RIO kinase 2 (yeast).
   
 0.999
wdr46
WD repeat domain 46.
   
  0.999
bysl
Bystin like.
   
 0.999
wdr3
WD repeat domain 3.
   
  0.998
ENSCHAP00000017756
Ribosomal RNA processing 12 homolog.
   
  0.998
ENSCHAP00000043355
IMP U3 small nucleolar ribonucleoprotein 4.
   
  0.998
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.