STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000059650CDC42 effector protein (Rho GTPase binding) 4a. (410 aa)    
Predicted Functional Partners:
SEPTIN7
Septin 7.
    
 0.724
ENSCHAP00000040034
Septin 15.
    
 0.724
LOC105911973
Septin-11-like.
    
 
 0.637
LOC105910213
Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1.
   
 
 0.633
ENSCHAP00000021709
BAR/IMD domain containing adaptor protein 2 like 1b.
   
 
 0.633
rhoj
Ras homolog family member J.
    
 0.631
LOC105900041
Rho-related GTP-binding protein RhoQ-like.
    
 0.631
rhoq
Ras homolog family member Q.
    
 0.631
rhoh
Ras homolog family member H.
    
 0.631
LOC105892187
Ras-related C3 botulinum toxin substrate 2.
    
 0.612
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.