STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000059846Si:ch211-204c21.1. (734 aa)    
Predicted Functional Partners:
ENSCHAP00000016490
Intersectin 2b.
   
 0.989
ENSCHAP00000057857
Intersectin 2a.
   
 0.989
ENSCHAP00000020068
Myosin VIb.
    
 0.931
ENSCHAP00000033918
Myosin VIa.
    
 0.931
LOC105892101
Growth factor receptor-bound protein 2.
   
 0.906
LOC105898779
Low-density lipoprotein receptor-like.
    
 0.893
ENSCHAP00000031129
Low density lipoprotein receptor adaptor protein 1b.
     
 0.885
LOC105910950
Growth arrest-specific protein 7-like.
   
 0.847
ENSCHAP00000050573
annotation not available
   
 0.847
ENSCHAP00000055200
Low density lipoprotein receptor b.
    
 0.838
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.