STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl7Ribosomal protein L7. (246 aa)    
Predicted Functional Partners:
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
 0.999
rplp0
Ribosomal protein lateral stalk subunit P0.
  
 0.999
rpl35
Ribosomal protein L35.
  
 0.999
rpl17
Ribosomal protein L17.
  
 0.999
rpl23a
Ribosomal protein L23a.
  
 0.999
rpl9
Ribosomal protein L9.
  
 0.999
rpl34
Ribosomal protein L34.
  
 0.998
rpl27
Ribosomal protein L27.
  
 0.998
ENSCHAP00000005646
Ribosomal protein L23.
  
 0.998
rpl18a
Ribosomal protein L18a.
   
 0.998
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.