STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000059983Tubulin tyrosine ligase-like family, member 10. (640 aa)    
Predicted Functional Partners:
ENSCHAP00000036655
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
   
  0.861
ENSCHAP00000038398
Decapping mRNA 2.
    
 
 0.760
ENSCHAP00000019698
Decapping mRNA 1B.
    
 
 0.699
dcp1a
Decapping mRNA 1A.
    
 
 0.699
ENSCHAP00000018524
Nicolin 1.
   
 0.612
ENSCHAP00000052910
Adenylate kinase 6.
   
 
  0.609
ENSCHAP00000060848
Tubulin polyglutamylase complex subunit 2.
   
  0.606
LOC105900701
Actin-related protein 3.
    
  0.605
actr3b
Actin related protein 3B.
    
  0.605
ENSCHAP00000019618
annotation not available
    
 0.603
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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