STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000060101Thromboxane A synthase 1 (platelet). (568 aa)    
Predicted Functional Partners:
ENSCHAP00000057220
Prostaglandin-endoperoxide synthase 1.
   
 
 0.924
ENSCHAP00000027704
annotation not available
    
 0.896
med29
Mediator complex subunit 29.
    
 0.893
ENSCHAP00000022934
Mediator complex subunit 15.
    
 0.893
ENSCHAP00000048371
Mediator complex subunit 14.
    
 0.892
ENSCHAP00000056092
Mediator complex subunit 20.
    
 0.891
ptges
Prostaglandin E synthase.
     
 0.889
med18
Mediator complex subunit 18.
    
 0.887
med10
Mediator complex subunit 10.
    
 0.886
med6
Mediator complex subunit 6.
    
 0.886
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.