STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105888754Homeobox protein OTX2-B-like. (326 aa)    
Predicted Functional Partners:
timm9
Translocase of inner mitochondrial membrane 9.
   
 0.879
timm10
Translocase of inner mitochondrial membrane 10.
   
 0.853
LOC105893756
Succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial-like.
    
 0.837
TIMM22
Translocase of inner mitochondrial membrane 22.
    
 0.794
ENSCHAP00000045474
Cactin.
    
 0.794
sdhc
Succinate dehydrogenase complex subunit C.
    
 0.669
LOC105890215
barH-like 1 homeobox protein.
    
 
 0.444
ENSCHAP00000016604
Translocase of inner mitochondrial membrane 23 homolog b (yeast).
    
 0.430
timm23
Translocase of inner mitochondrial membrane 23.
    
 0.430
ENSCHAP00000025863
SRY-box transcription factor 32.
   
 
 0.419
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.