STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf40Ring finger protein 40. (1010 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.994
ENSCHAP00000005506
annotation not available
    
 0.963
LOC105913296
Ubiquitin-conjugating enzyme E2 A-like.
    
 0.959
ube2a
Ubiquitin conjugating enzyme E2 A.
    
 0.959
ube2b
Ubiquitin conjugating enzyme E2 B.
    
 0.959
ENSCHAP00000000456
annotation not available
     
 0.938
ENSCHAP00000034363
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.907
UBE2N
Ubiquitin conjugating enzyme E2 N.
    
 0.880
ube2n
Ubiquitin conjugating enzyme E2 N.
    
 0.880
UBE2O
Ubiquitin conjugating enzyme E2 O.
   
 0.870
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.