STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000060553Torsin family 4, member Ab. (409 aa)    
Predicted Functional Partners:
STON2
Stonin 2.
    
  0.703
cops2
COP9 signalosome subunit 2.
   
 
  0.656
cops8
COP9 signalosome subunit 8.
   
 
  0.644
ENSCHAP00000015374
annotation not available
    
 0.642
ENSCHAP00000015583
annotation not available
    
 0.642
COPS6
COP9 signalosome subunit 6.
   
 
  0.640
ENSCHAP00000017813
Spartin b.
      
 0.538
ENSCHAP00000062654
Sulfatase modifying factor 1.
      
 0.538
tmem59l
Transmembrane protein 59 like.
      
 0.529
psmf1
Proteasome inhibitor subunit 1.
      
 0.521
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.